Accelerating Genomics Course - Meeting 4: GateKeeper (Spring 2022)

Project & Seminar, ETH Zürich, Spring 2022
Genome Sequencing on Mobile Devices (https://safari.ethz.ch/projects_and_seminars/spring2022/doku.php?id=genome_seq_mobile)
Accelerating Genome Analysis with FPGAs, GPUs, and New Execution Paradigms (https://safari.ethz.ch/projects_and_seminars/spring2022/doku.php?id=bioinformatics)

Meeting 4: GateKeeper
Lecturer: Professor Onur Mutlu (https://people.inf.ethz.ch/omutlu/)
Lecturer: Dr. Mohammed Alser
Date: April 1, 2022

Meeting 4 Slides (pptx): https://safari.ethz.ch/projects_and_seminars/spring2022/lib/exe/fetch.php?media=alser-pns-genomics-spring2022-lecture4-gatekeeper-afterlecture.pptx
Meeting 4 Slides (pdf): https://safari.ethz.ch/projects_and_seminars/spring2022/lib/exe/fetch.php?media=alser-pns-genomics-spring2022-lecture4-gatekeeper-afterlecture.pdf

Recommended Reading:
====================
Intelligent Architectures for Intelligent Computing Systems
https://people.inf.ethz.ch/omutlu/pub/intelligent-architectures-for-intelligent-computingsystems-invited_paper_DATE21.pdf

A Modern Primer on Processing in Memory
https://people.inf.ethz.ch/omutlu/pub/ModernPrimerOnPIM_springer-emerging-computing-bookchapter21.pdf

RowHammer: A Retrospective
https://people.inf.ethz.ch/omutlu/pub/RowHammer-Retrospective_ieee_tcad19.pdf


RECOMMENDED LECTURE VIDEOS & PLAYLISTS:
========================================
Computer Architecture Fall 2021 Lectures Playlist:
https://www.youtube.com/watch?v=4yfkM_5EFgo&list=PL5Q2soXY2Zi-Mnk1PxjEIG32HAGILkTOF

Digital Design and Computer Architecture Spring 2021 Livestream Lectures Playlist:
https://www.youtube.com/watch?v=LbC0EZY8yw4&list=PL5Q2soXY2Zi_uej3aY39YB5pfW4SJ7LlN

Featured Lectures:
https://www.youtube.com/watch?v=jVYCchBGNVc&list=PL5Q2soXY2Zi8VrmOTz44l2WupethSdh-M&index=1

Interview with Professor Onur Mutlu:
https://www.youtube.com/watch?v=8ffSEKZhmvo&list=PL5Q2soXY2Zi8VrmOTz44l2WupethSdh-M&index=9

The Story of RowHammer Lecture:
https://www.youtube.com/watch?v=sgd7PHQQ1AI&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=39

Accelerating Genome Analysis Lecture:
https://www.youtube.com/watch?v=r7sn41lH-4A&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=41

Memory-Centric Computing Systems Tutorial at IEDM 2021:
https://www.youtube.com/watch?v=H3sEaINPBOE&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=35

Intelligent Architectures for Intelligent Machines Lecture:
https://www.youtube.com/watch?v=GTieZPY4Wmc&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=38

Computer Architecture Fall 2020 Lectures Playlist:
https://www.youtube.com/watch?v=c3mPdZA-Fmc&list=PL5Q2soXY2Zi9xidyIgBxUz7xRPS-wisBN

Digital Design and Computer Architecture Spring 2020 Lectures Playlist:
https://www.youtube.com/watch?v=AJBmIaUneB0&list=PL5Q2soXY2Zi_FRrloMa2fUYWPGiZUBQo2

Public Lectures by Onur Mutlu, Playlist:
https://www.youtube.com/watch?v=kgiZlSOcGFM&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl

Computer Architecture at Carnegie Mellon Spring 2015 Lectures Playlist:
https://www.youtube.com/watch?v=zLP_X4wyHbY&list=PL5PHm2jkkXmi5CxxI7b3JCL1TWybTDtKq

Rethinking Memory System Design Lecture @stanfordonline :
https://www.youtube.com/watch?v=F7xZLNMIY1E&list=PL5Q2soXY2Zi8D_5MGV6EnXEJHnV2YFBJl&index=4